Lab mission: Our lab uses computational and experimental methods to address questions in evolutionary, systems and synthetic biology.
Specifically, we focus on (a) elucidating the emergence of complex biological phenomena during evolution, (b) developing algorithms and models for biological data analysis and prediction,
(c) developing computational tools and biological systems for biotechnological applications.
Methods: We employ machine learning, network theory, modeling, and large-scale simulations to evaluate hypotheses and analyze biological systems. In addition, we
perform evolutionary microbial experiments, create synthetic circuits and validate computational predictions in our experimental lab.
Location:The lab is part of the Department of Computer Science and UC Davis Genome Center. It is located on the fifth floor of the Genome and Biomedical Sciences Facility.
Joining the Lab:: We are always looking for motivated and talented people who enjoy working in an interdisciplinary environment. If you are a prospective/current graduate student or researcher and interested in joining the lab, check for available openings the here.
News
NSF support: Our virtual ecology simulator is scheduled to run on the
Blue Waters supercomputer in 2012.
Best paper award in Teragrid 2011: Our paper "A scalable multiscale framework for parallel simulation and visualization of microbial evolution" got two best paper awards in TG'11
Future of Science: Participated in the "Future of Science workshop, organized by the
Institute for the Future for the Moore Foundation. For a
beatiful roadmap depiction click here!
NSF Support: "A model-based system for the automated design of synthetic genetic circuits by mathematical optimization"
A multi-scale synthetic ecology simulator: The "Evolution in Variable Environments" (EVE) v2.1 simulator is
now available!
IGEM awards: we got a gold medal and the
best foundational advance award!
May 2012: The synthetic biology team was featured in the main UCD page. Here is the
article